SNP Profiles of PA 150 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AACCAACCAAGGGGCCAAGGGGAAAAAA
1._PA_150_[PER]_Fld#_173_Plt#_1
AACCAACCAAGGGGCCAAGGGGAAAAAA
2._GC-01-34-2-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
4._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
5._RUQ_1731
______GG_______
6._PA_150_[PER]
_____CCGG_AA_____
7._PA_150_[PER]
_____CCGG_AA_____
8._PA_150_[PER]
_____CCGG_AA_____
9._PA_150_[PER]
_____CCGG_AA_____
10._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
11._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
12._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
13._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
14._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
15._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
16._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
17._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
18._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
19._PA_150_[PER]
_____TTGG_AA_____
20._PA_150_[PER]
_____CCAG_AA_____
21._PA_150_[PER]
_____CCAG_AA_____
22._PA_150_[PER]
_____CCAG_AA_____
23._PA_150_[PER]
_____CCAG_AA_____
24._PA_150_[PER]
_____TTGG_AA_____
25._PA_150_[PER]
_____TTGG_AA_____
26._PA_150_[PER]
_____TTGG_AA_____
27._PA_150_[PER]
_____TTGG_AA_____
28._PA_150_[PER]
_____CTGG_AA_____
29._GC-01-034-2-11
CCACAGACTTCTAGGGATCTAGCTCCGT
30._PA_150_[PER]
_____CTAG_AT_____
31._PA_150_[PER]
_____CTGG_______
 1516171819202122232425262728
_Input profile
AAAAAAAAACGGAAGGACGGCCAGCCGG
1._PA_150_[PER]_Fld#_173_Plt#_1
AAAAAAAAACGGAAGGACGGCCAGCC_
2._GC-01-34-2-11
AAAAAGAAACGGAAGGCCGGCCGGCCGG
3._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
4._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
5._RUQ_1731
_TT______AC_GG___
6._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
7._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
8._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
9._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCC
10._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
11._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
12._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
13._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
14._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
15._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
16._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
17._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
18._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
19._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
20._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
21._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
22._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
23._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCC
24._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
25._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
26._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
27._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
28._PA_150_[PER]
_TTTT_AA_TT_ACTTCCAAGGCT
29._GC-01-034-2-11
CTGTCCTTACAGCTCTAACTCGAGGTCT
30._PA_150_[PER]
_GTCC_AC_CT_AACTCGAGGTCT
31._PA_150_[PER]
_GTTT_CC___CCTTCGAGGGTT
 2930313233343536373839404142
_Input profile
AGATGGAAGGGGGGGGGGCCTTAAGGGG
1._PA_150_[PER]_Fld#_173_Plt#_1
AGATGGAAGGGGGGGGGGCCTTAAGGGG
2._GC-01-34-2-11
AGTTGGACGGAGGGGGGGCCTTATGGGG
3._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
4._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
5._RUQ_1731
_____GG______GG_
6._PA_150_[PER]
CT__AA_GG_CCGG__AA__
7._PA_150_[PER]
CT__AACCGG_CCGG__AA__
8._PA_150_[PER]
CT__AACCGG_CCGG__AA__
9._PA_150_[PER]
CT__AACCGG_CCGG__AA__
10._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
11._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
12._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
13._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
14._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
15._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
16._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
17._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
18._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
19._PA_150_[PER]
TT__AACGAG_CCGG__AT__
20._PA_150_[PER]
CT__AACCAG_CCGG__AT__
21._PA_150_[PER]
CT__AACCAG_CCGG__AT__
22._PA_150_[PER]
CT__AACCAG_CCGG__AT__
23._PA_150_[PER]
CT__AACCAG_CCGG__AT__
24._PA_150_[PER]
TT__AACGAG_CCGG__AT__
25._PA_150_[PER]
TT__AACGAG_CCGG__AT__
26._PA_150_[PER]
TT__AACGAG_CCGG__AT__
27._PA_150_[PER]
TT__AACGAG_CCGG__AT__
28._PA_150_[PER]
CC__AACCAA_CTGG__TT__
29._GC-01-034-2-11
CTATGGACCCAAGGCCCGGTAAATAGGG
30._PA_150_[PER]
CT__ACCCAA_CCCG__AT__
31._PA_150_[PER]
___AC_AA_CCCC__TT__
 4344454647484950515253545556
_Input profile
AAAAGGGGGGAAGGGGCCACAAAAAGCG
1._PA_150_[PER]_Fld#_173_Plt#_1
AAAAGGGGGGAAGGGGCCACAAAAAGCG
2._GC-01-34-2-11
AAAAGGGGGGTTGGGGCCACAAACAGCG
3._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
4._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
5._RUQ_1731
_________AA___CG
6._PA_150_[PER]
AA___GG____AC_TT_CG
7._PA_150_[PER]
AA___GG____AC_TT_CG
8._PA_150_[PER]
AA___GG____AC_TT_CG
9._PA_150_[PER]
AA___GG____AC_TT_CG
10._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
11._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
12._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
13._GC-01-034-2-11
AATTGGGGGGTTCC_CCACAAGTAGCG
14._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
15._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
16._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
17._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
18._GC-01-034-2-11
AATTGGGGGGATCC_CCACGGTTAGGG
19._PA_150_[PER]
AA___GG____AC_TT_GG
20._PA_150_[PER]
AA___GG____AC_GT_CG
21._PA_150_[PER]
AA___GG____AC_GT_CG
22._PA_150_[PER]
AA___GG____AC_GT_CG
23._PA_150_[PER]
AA___GG____AC_GT_CG
24._PA_150_[PER]
AA___GG____AC_TT_GG
25._PA_150_[PER]
AA___GG____AC_TT_GG
26._PA_150_[PER]
AA___GG____AC_TT_GG
27._PA_150_[PER]
AA___GG____AC_TT_GG
28._PA_150_[PER]
AA___GG____CC_GT_GG
29._GC-01-034-2-11
AACTAGAGGGATCG_ACACAGGTAGCC
30._PA_150_[PER]
AA___GG____AC_GT_CC
31._PA_150_[PER]
AA___GG____AC_GG_GG
 5758596061626364656667686970
_Input profile
ACGGAGAAAAAACCAGAAAACCAAAAGG
1._PA_150_[PER]_Fld#_173_Plt#_1
ACGGAGAAAAAACCAGAAAACCAAAAGG
2._GC-01-34-2-11
CCGGAGAAAGAACCAGAAAACCAAAACG
3._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
4._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
5._RUQ_1731
AC_CT___GGAG____AATT
6._PA_150_[PER]
AC__TT__GG_______
7._PA_150_[PER]
AC__TT__GG_______
8._PA_150_[PER]
AC__TT__GG_______
9._PA_150_[PER]
AC__TT__GG_______
10._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
11._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
12._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
13._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
14._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
15._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
16._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
17._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
18._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
19._PA_150_[PER]
AA__TT__GT_______
20._PA_150_[PER]
CC__TT__GG_______
21._PA_150_[PER]
CC__TT__GG_______
22._PA_150_[PER]
CC__TT__GG_______
23._PA_150_[PER]
CC__TT__GG_______
24._PA_150_[PER]
AA__TT__GT_______
25._PA_150_[PER]
AA__TT__GT_______
26._PA_150_[PER]
AA__TT__GT_______
27._PA_150_[PER]
AA__TT__GT_______
28._PA_150_[PER]
AA__CT__GG_______
29._GC-01-034-2-11
ACCCCTTTAAAAGGAGTTTTGTTTACCG
30._PA_150_[PER]
AC__TT__GG_______
31._PA_150_[PER]
AC__CT__GG_______
 717273747576777879808182  
_Input profile
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
1._PA_150_[PER]_Fld#_173_Plt#_1
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
2._GC-01-34-2-11
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
3._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
4._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
5._RUQ_1731
_GG__GG______AGX_XX_X
6._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
7._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
8._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
9._PA_150_[PER]
_GGCC___CTCC_AACCAGX_XX_X
10._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
11._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
12._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
13._GC-01-034-2-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
14._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
15._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
16._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
17._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
18._GC-01-034-2-11
_GGCTCCGGCCTTGGCCAACTGGX_XX_X
19._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
20._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
21._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
22._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
23._PA_150_[PER]
_GGCC___CTCC_AACTAGX_XX_X
24._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
25._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
26._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
27._PA_150_[PER]
_GGCT___TTGG_AACTGGX_XX_X
28._PA_150_[PER]
_CCCT___CTGG_AACTAGX_XX_X
29._GC-01-034-2-11
AACGCTCGAGCCCTCCCCATCTAGX_XX_X
30._PA_150_[PER]
_CGCT___CTCC_ATCTAGX_XX_X
31._PA_150_[PER]
_CCCC___CCCG_AACTAAX_XX_X

Input profile: PA_150_[PER] RUQ_1731

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

identical
81 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

2._PA_150_[PER] GC-01-34-2-11

88.4 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

3._PA_150_[PER] GC-01-34-2-11

70.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

4._PA_150_[PER] GC-01-34-2-11

70.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

5._PA_150_[PER] RUQ_1731

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

6._PA_150_[PER]

50 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

7._PA_150_[PER]

48.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

8._PA_150_[PER]

48.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

9._PA_150_[PER]

48.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

10._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

21._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

22._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

23._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

24._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

25._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

26._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

27._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

28._PA_150_[PER]

38.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

29._PA_150_[PER] GC-01-034-2-11

37.7 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

30._PA_150_[PER]

37.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

31._PA_150_[PER]

37.1 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998